PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000171G0880
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 257aa    MW: 28117.3 Da    PI: 6.4053
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000171G0880genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.6e-1883133255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp     k  r++lg+++ta eAa+ +++a+ +l+g
  PH01000171G0880  83 RYRGVRQRP-WGKFAAEIRDP---ArKGSRVWLGTYDTAVEAARSYDRAAFRLRG 133
                      7********.**********8...4445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.36883141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-3183142IPR001471AP2/ERF domain
SMARTSM003801.3E-3783147IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-2283142IPR016177DNA-binding domain
PfamPF008471.2E-1283133IPR001471AP2/ERF domain
CDDcd000181.52E-2883142No hitNo description
PRINTSPR003673.8E-138495IPR001471AP2/ERF domain
PRINTSPR003673.8E-13123143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDFLYQHLDL IRAHLLDDHY HGGSAAASSD SSASTPSPPG RRPAPALSVS LPPKPSSTLQ  60
QQWAPPQEQH QQENCYSEED FRRYRGVRQR PWGKFAAEIR DPARKGSRVW LGTYDTAVEA  120
ARSYDRAAFR LRGSKAILNF PNEVSTAAGQ WEPPVPLAAA TMTTGGKRAR SPERAQEEEL  180
SMREVKKERV LEEEEAANKT GLAAASWDGM ASTAAAVGGG VDFWEEMEEL KGICSPPPLS  240
PLSPHPHFAF PQLSVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2884146668ATERF1
3gcc_A2e-2884146668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0947120.0FP094712.1 Phyllostachys edulis cDNA clone: bphyem113i06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464924.11e-70hypothetical protein SORBIDRAFT_01g028930
TrEMBLF2DBM37e-72F2DBM3_HORVD; Predicted protein
STRINGMLOC_70692.12e-70(Hordeum vulgare)
STRINGSb01g028930.14e-70(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.16e-36ethylene responsive element binding factor 5